STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chiPu_0004930PHB domain-containing protein. (373 aa)    
Predicted Functional Partners:
chiPu_0005757
RING-type domain-containing protein.
    
 
 0.802
chiPu_0015808
Ubiquitin-like domain-containing protein.
    
 
 0.799
chiPu_0012999
RING-type domain-containing protein.
   
 0.773
chiPu_0026558
Uncharacterized protein.
   
 0.773
chiPu_0026539
Uncharacterized protein.
   
 0.773
chiPu_0002189
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
    
 0.742
chiPu_0002576
Fibronectin type-II domain-containing protein.
     
 0.719
chiPu_0004734
UBX domain-containing protein.
   
 
 0.712
chiPu_0019445
RING-type domain-containing protein.
    
 
 0.711
chiPu_0004846
Uncharacterized protein.
    
 
 0.711
Your Current Organism:
Chiloscyllium punctatum
NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark
Server load: low (30%) [HD]