chiPu_0006453 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0006453

Uncharacterized protein. (535 aa)

Predicted Functional Partners:

chiPu_0013491

0.900

chiPu_0007051

0.593

chiPu_0005166

0.568

chiPu_0002765

0.551

chiPu_0028575

0.545

chiPu_0005562

0.537

chiPu_0014615

0.537

chiPu_0018834

0.535

chiPu_0004667

0.528

TRMT5

0.517

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TRMT5	chiPu_0004667	A0A401S362	A0A401S779	tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.	Flavodoxin-like domain-containing protein.	0.724
TRMT5	chiPu_0005166	A0A401S362	A0A401S8Q0	tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.	TRUD domain-containing protein.	0.461
TRMT5	chiPu_0006453	A0A401S362	A0A401SC89	tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.	Uncharacterized protein.	0.517
TRMT5	chiPu_0007051	A0A401S362	A0A401SE54	tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.	TRUD domain-containing protein.	0.481
TRMT5	chiPu_0018834	A0A401S362	A0A401RQ48	tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.	PseudoU_synth_1 domain-containing protein.	0.561
TRMT5	chiPu_0028575	A0A401S362	A0A401TPU3	tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.	tRNA pseudouridine synthase.	0.527
chiPu_0002765	chiPu_0004667	A0A401S1U6	A0A401S779	PUA domain-containing protein.	Flavodoxin-like domain-containing protein.	0.421
chiPu_0002765	chiPu_0005166	A0A401S1U6	A0A401S8Q0	PUA domain-containing protein.	TRUD domain-containing protein.	0.504
chiPu_0002765	chiPu_0005562	A0A401S1U6	A0A401S9W0	PUA domain-containing protein.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.565
chiPu_0002765	chiPu_0006453	A0A401S1U6	A0A401SC89	PUA domain-containing protein.	Uncharacterized protein.	0.551
chiPu_0002765	chiPu_0007051	A0A401S1U6	A0A401SE54	PUA domain-containing protein.	TRUD domain-containing protein.	0.699
chiPu_0002765	chiPu_0014615	A0A401S1U6	A0A401T0E8	PUA domain-containing protein.	PseudoU_synth_2 domain-containing protein.	0.431
chiPu_0002765	chiPu_0018834	A0A401S1U6	A0A401RQ48	PUA domain-containing protein.	PseudoU_synth_1 domain-containing protein.	0.937
chiPu_0002765	chiPu_0028575	A0A401S1U6	A0A401TPU3	PUA domain-containing protein.	tRNA pseudouridine synthase.	0.835
chiPu_0004667	TRMT5	A0A401S779	A0A401S362	Flavodoxin-like domain-containing protein.	tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.	0.724
chiPu_0004667	chiPu_0002765	A0A401S779	A0A401S1U6	Flavodoxin-like domain-containing protein.	PUA domain-containing protein.	0.421
chiPu_0004667	chiPu_0005166	A0A401S779	A0A401S8Q0	Flavodoxin-like domain-containing protein.	TRUD domain-containing protein.	0.459
chiPu_0004667	chiPu_0006453	A0A401S779	A0A401SC89	Flavodoxin-like domain-containing protein.	Uncharacterized protein.	0.528
chiPu_0004667	chiPu_0007051	A0A401S779	A0A401SE54	Flavodoxin-like domain-containing protein.	TRUD domain-containing protein.	0.459
chiPu_0004667	chiPu_0028575	A0A401S779	A0A401TPU3	Flavodoxin-like domain-containing protein.	tRNA pseudouridine synthase.	0.403