STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chiPu_0007215Uncharacterized protein. (798 aa)    
Predicted Functional Partners:
chiPu_0000656
Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.
   
 0.893
chiPu_0005698
zf-RING-like domain-containing protein.
    
 0.890
chiPu_0004320
SP-RING-type domain-containing protein.
    
 0.888
chiPu_0016512
AAA_15 domain-containing protein.
    
 0.888
chiPu_0006609
SMC_N domain-containing protein.
    
 0.855
chiPu_0006608
AAA_23 domain-containing protein.
    
 0.855
chiPu_0019595
SMC hinge domain-containing protein.
    
 0.699
chiPu_0019884
Structural maintenance of chromosomes protein.
   
 0.678
chiPu_0007264
Structural maintenance of chromosomes protein.
   
 0.678
chiPu_0007374
Structural maintenance of chromosomes protein.
    
 0.669
Your Current Organism:
Chiloscyllium punctatum
NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark
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