STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chiPu_0008937Autophagy protein 5; Involved in autophagic vesicle formation. (275 aa)    
Predicted Functional Partners:
chiPu_0019555
Autophagy-related protein 3.
   
 0.996
chiPu_0001994
WD_REPEATS_REGION domain-containing protein.
   
 0.993
chiPu_0015798
WD_REPEATS_REGION domain-containing protein.
   
 0.993
chiPu_0001995
HTH CENPB-type domain-containing protein.
   
 0.984
chiPu_0021402
Uncharacterized protein.
   
 0.971
chiPu_0006109
Uncharacterized protein.
   
 0.971
chiPu_0003651
Uncharacterized protein.
    
 0.966
chiPu_0008361
Uncharacterized protein.
    
 0.966
chiPu_0017661
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 as well as the ATG8 family proteins for their conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Required for autophagic death induced by caspase-8 inhibition. Required for mitophagy which contributes to regulate mitochondrial quantity and quality by eliminating the mitochondria [...]
    
 0.962
chiPu_0011349
Uncharacterized protein.
   
 0.950
Your Current Organism:
Chiloscyllium punctatum
NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark
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