STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chiPu_0009398Uncharacterized protein. (657 aa)    
Predicted Functional Partners:
chiPu_0017324
TFIIE beta domain-containing protein.
    
 0.999
chiPu_0018830
Uncharacterized protein.
   
 0.999
chiPu_0003213
RING-type domain-containing protein.
    
 0.999
chiPu_0011034
General transcription factor IIH subunit.
    
 0.999
chiPu_0014226
Uncharacterized protein.
    
 0.999
chiPu_0014344
Helicase ATP-binding domain-containing protein.
    
 0.999
chiPu_0027137
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.999
chiPu_0008103
Uncharacterized protein.
    
 0.995
chiPu_0020892
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.992
chiPu_0013214
TFIIB-type domain-containing protein.
    
 0.992
Your Current Organism:
Chiloscyllium punctatum
NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark
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