STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chiPu_0010511RING-type domain-containing protein. (945 aa)    
Predicted Functional Partners:
chiPu_0006843
Ubiquitin-like domain-containing protein.
    
 0.921
chiPu_0020504
Ubiquitin-like domain-containing protein.
    
 0.918
chiPu_0020620
Mothers against decapentaplegic homolog.
   
 0.912
chiPu_0014507
Mothers against decapentaplegic homolog.
   
 0.912
chiPu_0014849
Mothers against decapentaplegic homolog.
   
 0.912
chiPu_0012692
Small ubiquitin-related modifier.
   
 0.895
chiPu_0010725
c-SKI_SMAD_bind domain-containing protein.
   
 0.882
chiPu_0012899
Mothers against decapentaplegic homolog.
   
 0.877
chiPu_0014510
Mothers against decapentaplegic homolog.
   
 0.877
chiPu_0001937
c-SKI_SMAD_bind domain-containing protein.
   
 0.844
Your Current Organism:
Chiloscyllium punctatum
NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark
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