chiPu_0011008 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0011008

Uncharacterized protein. (407 aa)

Predicted Functional Partners:

chiPu_0014034

0.877

chiPu_0030108

0.877

chiPu_0014658

0.867

chiPu_0014657

0.867

chiPu_0003872

0.782

chiPu_0016443

0.775

chiPu_0001196

0.771

chiPu_0017141

0.771

chiPu_0008149

0.768

chiPu_0007557

0.765

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chiPu_0001196	chiPu_0003872	A0A401RXD5	A0A401S4Z1	Uncharacterized protein.	zf-CHCC domain-containing protein.	0.998
chiPu_0001196	chiPu_0007557	A0A401RXD5	A0A401SFK0	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.998
chiPu_0001196	chiPu_0008149	A0A401RXD5	A0A401SH20	Uncharacterized protein.	Uncharacterized protein; Belongs to the complex I LYR family.	0.998
chiPu_0001196	chiPu_0011008	A0A401RXD5	A0A401SQA4	Uncharacterized protein.	Uncharacterized protein.	0.771
chiPu_0001196	chiPu_0014034	A0A401RXD5	A0A401SYT6	Uncharacterized protein.	Uncharacterized protein.	0.997
chiPu_0001196	chiPu_0014657	A0A401RXD5	A0A401T0L1	Uncharacterized protein.	PALB2_WD40 domain-containing protein.	0.986
chiPu_0001196	chiPu_0014658	A0A401RXD5	A0A401T0I7	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.994
chiPu_0001196	chiPu_0016443	A0A401RXD5	A0A401T5I0	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.998
chiPu_0001196	chiPu_0030108	A0A401RXD5	A0A401TTZ9	Uncharacterized protein.	Uncharacterized protein.	0.993
chiPu_0003872	chiPu_0001196	A0A401S4Z1	A0A401RXD5	zf-CHCC domain-containing protein.	Uncharacterized protein.	0.998
chiPu_0003872	chiPu_0007557	A0A401S4Z1	A0A401SFK0	zf-CHCC domain-containing protein.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.999
chiPu_0003872	chiPu_0008149	A0A401S4Z1	A0A401SH20	zf-CHCC domain-containing protein.	Uncharacterized protein; Belongs to the complex I LYR family.	0.999
chiPu_0003872	chiPu_0011008	A0A401S4Z1	A0A401SQA4	zf-CHCC domain-containing protein.	Uncharacterized protein.	0.782
chiPu_0003872	chiPu_0014034	A0A401S4Z1	A0A401SYT6	zf-CHCC domain-containing protein.	Uncharacterized protein.	0.999
chiPu_0003872	chiPu_0014657	A0A401S4Z1	A0A401T0L1	zf-CHCC domain-containing protein.	PALB2_WD40 domain-containing protein.	0.996
chiPu_0003872	chiPu_0014658	A0A401S4Z1	A0A401T0I7	zf-CHCC domain-containing protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.999
chiPu_0003872	chiPu_0016443	A0A401S4Z1	A0A401T5I0	zf-CHCC domain-containing protein.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.999
chiPu_0003872	chiPu_0017141	A0A401S4Z1	A0A401T7H4	zf-CHCC domain-containing protein.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.998
chiPu_0003872	chiPu_0030108	A0A401S4Z1	A0A401TTZ9	zf-CHCC domain-containing protein.	Uncharacterized protein.	0.998
chiPu_0007557	chiPu_0001196	A0A401SFK0	A0A401RXD5	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	Uncharacterized protein.	0.998