chiPu_0013230 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0013230

Uncharacterized protein. (364 aa)

Predicted Functional Partners:

chiPu_0020593

0.945

chiPu_0004497

0.728

chiPu_0015180

0.728

chiPu_0006549

0.640

chiPu_0015361

0.640

chiPu_0015265

0.491

chiPu_0008331

0.442

chiPu_0022140

0.422

chiPu_0017448

0.410

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chiPu_0004497	chiPu_0006549	A0A401S6R2	A0A401SCI8	Uncharacterized protein.	EB1 C-terminal domain-containing protein.	0.825
chiPu_0004497	chiPu_0008331	A0A401S6R2	A0A401SHL3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.400
chiPu_0004497	chiPu_0013230	A0A401S6R2	A0A401SWI2	Uncharacterized protein.	Uncharacterized protein.	0.728
chiPu_0004497	chiPu_0015361	A0A401S6R2	A0A401T2I9	Uncharacterized protein.	Uncharacterized protein.	0.830
chiPu_0004497	chiPu_0020593	A0A401S6R2	A0A401RHA0	Uncharacterized protein.	EGF_CA domain-containing protein.	0.422
chiPu_0006549	chiPu_0004497	A0A401SCI8	A0A401S6R2	EB1 C-terminal domain-containing protein.	Uncharacterized protein.	0.825
chiPu_0006549	chiPu_0008331	A0A401SCI8	A0A401SHL3	EB1 C-terminal domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.400
chiPu_0006549	chiPu_0013230	A0A401SCI8	A0A401SWI2	EB1 C-terminal domain-containing protein.	Uncharacterized protein.	0.640
chiPu_0006549	chiPu_0015180	A0A401SCI8	A0A401T205	EB1 C-terminal domain-containing protein.	Uncharacterized protein.	0.825
chiPu_0006549	chiPu_0020593	A0A401SCI8	A0A401RHA0	EB1 C-terminal domain-containing protein.	EGF_CA domain-containing protein.	0.422
chiPu_0008331	chiPu_0004497	A0A401SHL3	A0A401S6R2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.400
chiPu_0008331	chiPu_0006549	A0A401SHL3	A0A401SCI8	WD_REPEATS_REGION domain-containing protein.	EB1 C-terminal domain-containing protein.	0.400
chiPu_0008331	chiPu_0013230	A0A401SHL3	A0A401SWI2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.442
chiPu_0008331	chiPu_0015180	A0A401SHL3	A0A401T205	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.400
chiPu_0008331	chiPu_0015361	A0A401SHL3	A0A401T2I9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.400
chiPu_0008331	chiPu_0022140	A0A401SHL3	A0A401RL55	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.400
chiPu_0013230	chiPu_0004497	A0A401SWI2	A0A401S6R2	Uncharacterized protein.	Uncharacterized protein.	0.728
chiPu_0013230	chiPu_0006549	A0A401SWI2	A0A401SCI8	Uncharacterized protein.	EB1 C-terminal domain-containing protein.	0.640
chiPu_0013230	chiPu_0008331	A0A401SWI2	A0A401SHL3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.442
chiPu_0013230	chiPu_0015180	A0A401SWI2	A0A401T205	Uncharacterized protein.	Uncharacterized protein.	0.728