chiPu_0014990 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0014990

Uncharacterized protein. (1673 aa)

Predicted Functional Partners:

chiPu_0002070

0.989

chiPu_0010687

0.982

chiPu_0002976

0.925

chiPu_0003154

0.925

chiPu_0005975

0.869

chiPu_0008106

0.869

chiPu_0012326

0.869

chiPu_0013486

0.869

chiPu_0006088

0.865

chiPu_0018547

0.850

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chiPu_0002070	chiPu_0002976	A0A401RZU9	A0A401S2F5	Uncharacterized protein.	Uncharacterized protein.	0.480
chiPu_0002070	chiPu_0003154	A0A401RZU9	A0A401S2Z9	Uncharacterized protein.	Uncharacterized protein.	0.435
chiPu_0002070	chiPu_0005975	A0A401RZU9	A0A401SB04	Uncharacterized protein.	Uncharacterized protein.	0.990
chiPu_0002070	chiPu_0006088	A0A401RZU9	A0A401SB90	Uncharacterized protein.	Uncharacterized protein.	0.756
chiPu_0002070	chiPu_0008106	A0A401RZU9	A0A401SH32	Uncharacterized protein.	Uncharacterized protein.	0.990
chiPu_0002070	chiPu_0010687	A0A401RZU9	A0A401SPC0	Uncharacterized protein.	Uncharacterized protein.	0.982
chiPu_0002070	chiPu_0012326	A0A401RZU9	A0A401STX7	Uncharacterized protein.	Uncharacterized protein.	0.990
chiPu_0002070	chiPu_0013486	A0A401RZU9	A0A401SX97	Uncharacterized protein.	Uncharacterized protein.	0.990
chiPu_0002070	chiPu_0014990	A0A401RZU9	A0A401T1G7	Uncharacterized protein.	Uncharacterized protein.	0.989
chiPu_0002070	chiPu_0018547	A0A401RZU9	A0A401RNY8	Uncharacterized protein.	Uncharacterized protein.	0.990
chiPu_0002976	chiPu_0002070	A0A401S2F5	A0A401RZU9	Uncharacterized protein.	Uncharacterized protein.	0.480
chiPu_0002976	chiPu_0003154	A0A401S2F5	A0A401S2Z9	Uncharacterized protein.	Uncharacterized protein.	0.911
chiPu_0002976	chiPu_0006088	A0A401S2F5	A0A401SB90	Uncharacterized protein.	Uncharacterized protein.	0.434
chiPu_0002976	chiPu_0014990	A0A401S2F5	A0A401T1G7	Uncharacterized protein.	Uncharacterized protein.	0.925
chiPu_0003154	chiPu_0002070	A0A401S2Z9	A0A401RZU9	Uncharacterized protein.	Uncharacterized protein.	0.435
chiPu_0003154	chiPu_0002976	A0A401S2Z9	A0A401S2F5	Uncharacterized protein.	Uncharacterized protein.	0.911
chiPu_0003154	chiPu_0006088	A0A401S2Z9	A0A401SB90	Uncharacterized protein.	Uncharacterized protein.	0.404
chiPu_0003154	chiPu_0014990	A0A401S2Z9	A0A401T1G7	Uncharacterized protein.	Uncharacterized protein.	0.925
chiPu_0005975	chiPu_0002070	A0A401SB04	A0A401RZU9	Uncharacterized protein.	Uncharacterized protein.	0.990
chiPu_0005975	chiPu_0006088	A0A401SB04	A0A401SB90	Uncharacterized protein.	Uncharacterized protein.	0.927