chiPu_0015250 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0015250

Tim44 domain-containing protein. (465 aa)

Predicted Functional Partners:

chiPu_0010675

0.992

chiPu_0006520

0.989

chiPu_0032400

0.988

chiPu_0005221

0.983

chiPu_0013758

0.968

chiPu_0031357

0.968

chiPu_0003142

0.961

chiPu_0014617

0.961

chiPu_0031452

0.961

chiPu_0004602

0.955

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chiPu_0003142	chiPu_0004602	A0A401S2X3	A0A401S724	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	Uncharacterized protein; Belongs to the GrpE family.	0.441
chiPu_0003142	chiPu_0005221	A0A401S2X3	A0A401S8T0	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	Mitochondrial import inner membrane translocase subunit TIM17; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	0.710
chiPu_0003142	chiPu_0006520	A0A401S2X3	A0A401SCL5	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	Uncharacterized protein.	0.815
chiPu_0003142	chiPu_0010675	A0A401S2X3	A0A401SP88	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	Mitochondrial import inner membrane translocase subunit TIM23; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	0.780
chiPu_0003142	chiPu_0013758	A0A401S2X3	A0A401SY06	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	Uncharacterized protein.	0.891
chiPu_0003142	chiPu_0015250	A0A401S2X3	A0A401T265	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	Tim44 domain-containing protein.	0.961
chiPu_0003142	chiPu_0031357	A0A401S2X3	A0A401TWF3	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	Uncharacterized protein.	0.891
chiPu_0003142	chiPu_0032400	A0A401S2X3	A0A401U000	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	Uncharacterized protein.	0.959
chiPu_0004602	chiPu_0003142	A0A401S724	A0A401S2X3	Uncharacterized protein; Belongs to the GrpE family.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.441
chiPu_0004602	chiPu_0005221	A0A401S724	A0A401S8T0	Uncharacterized protein; Belongs to the GrpE family.	Mitochondrial import inner membrane translocase subunit TIM17; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	0.697
chiPu_0004602	chiPu_0006520	A0A401S724	A0A401SCL5	Uncharacterized protein; Belongs to the GrpE family.	Uncharacterized protein.	0.812
chiPu_0004602	chiPu_0010675	A0A401S724	A0A401SP88	Uncharacterized protein; Belongs to the GrpE family.	Mitochondrial import inner membrane translocase subunit TIM23; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	0.749
chiPu_0004602	chiPu_0013758	A0A401S724	A0A401SY06	Uncharacterized protein; Belongs to the GrpE family.	Uncharacterized protein.	0.891
chiPu_0004602	chiPu_0014617	A0A401S724	A0A401T0H2	Uncharacterized protein; Belongs to the GrpE family.	Uncharacterized protein; Belongs to the GrpE family.	0.453
chiPu_0004602	chiPu_0015250	A0A401S724	A0A401T265	Uncharacterized protein; Belongs to the GrpE family.	Tim44 domain-containing protein.	0.955
chiPu_0004602	chiPu_0031357	A0A401S724	A0A401TWF3	Uncharacterized protein; Belongs to the GrpE family.	Uncharacterized protein.	0.891
chiPu_0004602	chiPu_0031452	A0A401S724	A0A401TXK7	Uncharacterized protein; Belongs to the GrpE family.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.441
chiPu_0004602	chiPu_0032400	A0A401S724	A0A401U000	Uncharacterized protein; Belongs to the GrpE family.	Uncharacterized protein.	0.967
chiPu_0005221	chiPu_0003142	A0A401S8T0	A0A401S2X3	Mitochondrial import inner membrane translocase subunit TIM17; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.710
chiPu_0005221	chiPu_0004602	A0A401S8T0	A0A401S724	Mitochondrial import inner membrane translocase subunit TIM17; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	Uncharacterized protein; Belongs to the GrpE family.	0.697