chiPu_0015560 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0015560

Uncharacterized protein. (487 aa)

Predicted Functional Partners:

chiPu_0017142

0.999

chiPu_0007201

0.984

chiPu_0007202

0.984

chiPu_0015558

0.979

chiPu_0015717

0.979

chiPu_0002236

0.962

chiPu_0031635

0.891

chiPu_0006143

0.781

chiPu_0006136

0.769

chiPu_0013798

0.769

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chiPu_0002236	chiPu_0006143	A0A401S0F6	A0A401SBE3	Uncharacterized protein.	AAA domain-containing protein.	0.688
chiPu_0002236	chiPu_0007201	A0A401S0F6	A0A401SEC3	Uncharacterized protein.	Uncharacterized protein.	0.792
chiPu_0002236	chiPu_0007202	A0A401S0F6	A0A401SEF9	Uncharacterized protein.	Uncharacterized protein.	0.787
chiPu_0002236	chiPu_0015558	A0A401S0F6	A0A401T355	Uncharacterized protein.	MCU domain-containing protein.	0.824
chiPu_0002236	chiPu_0015560	A0A401S0F6	A0A401T354	Uncharacterized protein.	Uncharacterized protein.	0.962
chiPu_0002236	chiPu_0015717	A0A401S0F6	A0A401T3H4	Uncharacterized protein.	Uncharacterized protein.	0.824
chiPu_0002236	chiPu_0017142	A0A401S0F6	A0A401T7Q3	Uncharacterized protein.	Uncharacterized protein.	0.885
chiPu_0002236	chiPu_0031635	A0A401S0F6	A0A401TYC7	Uncharacterized protein.	Prohibitin.	0.722
chiPu_0006136	chiPu_0006143	A0A401SBG7	A0A401SBE3	AAA domain-containing protein.	AAA domain-containing protein.	0.832
chiPu_0006136	chiPu_0007201	A0A401SBG7	A0A401SEC3	AAA domain-containing protein.	Uncharacterized protein.	0.651
chiPu_0006136	chiPu_0007202	A0A401SBG7	A0A401SEF9	AAA domain-containing protein.	Uncharacterized protein.	0.651
chiPu_0006136	chiPu_0015558	A0A401SBG7	A0A401T355	AAA domain-containing protein.	MCU domain-containing protein.	0.690
chiPu_0006136	chiPu_0015560	A0A401SBG7	A0A401T354	AAA domain-containing protein.	Uncharacterized protein.	0.769
chiPu_0006136	chiPu_0015717	A0A401SBG7	A0A401T3H4	AAA domain-containing protein.	Uncharacterized protein.	0.690
chiPu_0006136	chiPu_0017142	A0A401SBG7	A0A401T7Q3	AAA domain-containing protein.	Uncharacterized protein.	0.814
chiPu_0006136	chiPu_0031635	A0A401SBG7	A0A401TYC7	AAA domain-containing protein.	Prohibitin.	0.949
chiPu_0006143	chiPu_0002236	A0A401SBE3	A0A401S0F6	AAA domain-containing protein.	Uncharacterized protein.	0.688
chiPu_0006143	chiPu_0006136	A0A401SBE3	A0A401SBG7	AAA domain-containing protein.	AAA domain-containing protein.	0.832
chiPu_0006143	chiPu_0007201	A0A401SBE3	A0A401SEC3	AAA domain-containing protein.	Uncharacterized protein.	0.709
chiPu_0006143	chiPu_0007202	A0A401SBE3	A0A401SEF9	AAA domain-containing protein.	Uncharacterized protein.	0.709