STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chiPu_0015808Ubiquitin-like domain-containing protein. (359 aa)    
Predicted Functional Partners:
chiPu_0020826
PHB domain-containing protein.
    
 
 0.799
chiPu_0004930
PHB domain-containing protein.
    
 
 0.799
chiPu_0007542
Ubiquitin-like domain-containing protein.
  
 
 
0.777
chiPu_0005757
RING-type domain-containing protein.
    
 
 0.736
chiPu_0002229
Uncharacterized protein.
    
  0.643
chiPu_0007654
Uncharacterized protein.
    
  0.643
chiPu_0013596
Uncharacterized protein.
    
  0.643
chiPu_0023325
Protein kinase domain-containing protein.
    
  0.643
chiPu_0008862
Uncharacterized protein.
    
 
 0.624
chiPu_0012999
RING-type domain-containing protein.
    
 
 0.558
Your Current Organism:
Chiloscyllium punctatum
NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.