chiPu_0016400 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0016400

HIT-type domain-containing protein. (419 aa)

Predicted Functional Partners:

chiPu_0003725

0.886

chiPu_0012740

0.863

chiPu_0006070

0.856

chiPu_0012685

0.853

chiPu_0013385

0.793

chiPu_0016798

0.780

chiPu_0005277

0.776

chiPu_0012663

0.703

chiPu_0011207

0.663

chiPu_0012658

0.617

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chiPu_0003725	chiPu_0005277	A0A401S4K2	A0A401S8Y4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.851
chiPu_0003725	chiPu_0012658	A0A401S4K2	A0A401SUW4	Uncharacterized protein.	Uncharacterized protein.	0.441
chiPu_0003725	chiPu_0012663	A0A401S4K2	A0A401SUY2	Uncharacterized protein.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.608
chiPu_0003725	chiPu_0012685	A0A401S4K2	A0A401SUZ6	Uncharacterized protein.	Uncharacterized protein.	0.968
chiPu_0003725	chiPu_0012740	A0A401S4K2	A0A401SV36	Uncharacterized protein.	Uncharacterized protein.	0.948
chiPu_0003725	chiPu_0013385	A0A401S4K2	A0A401SWZ8	Uncharacterized protein.	Uncharacterized protein.	0.956
chiPu_0003725	chiPu_0016400	A0A401S4K2	A0A401T5I8	Uncharacterized protein.	HIT-type domain-containing protein.	0.886
chiPu_0003725	chiPu_0016798	A0A401S4K2	A0A401T6R2	Uncharacterized protein.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.571
chiPu_0005277	chiPu_0003725	A0A401S8Y4	A0A401S4K2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.851
chiPu_0005277	chiPu_0012685	A0A401S8Y4	A0A401SUZ6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
chiPu_0005277	chiPu_0012740	A0A401S8Y4	A0A401SV36	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.913
chiPu_0005277	chiPu_0013385	A0A401S8Y4	A0A401SWZ8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.774
chiPu_0005277	chiPu_0016400	A0A401S8Y4	A0A401T5I8	WD_REPEATS_REGION domain-containing protein.	HIT-type domain-containing protein.	0.776
chiPu_0006070	chiPu_0016400	A0A401SBC6	A0A401T5I8	Uncharacterized protein.	HIT-type domain-containing protein.	0.856
chiPu_0011207	chiPu_0016400	A0A401SQV4	A0A401T5I8	GLUE N-terminal domain-containing protein.	HIT-type domain-containing protein.	0.663
chiPu_0012658	chiPu_0003725	A0A401SUW4	A0A401S4K2	Uncharacterized protein.	Uncharacterized protein.	0.441
chiPu_0012658	chiPu_0012663	A0A401SUW4	A0A401SUY2	Uncharacterized protein.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.972
chiPu_0012658	chiPu_0012685	A0A401SUW4	A0A401SUZ6	Uncharacterized protein.	Uncharacterized protein.	0.629
chiPu_0012658	chiPu_0013385	A0A401SUW4	A0A401SWZ8	Uncharacterized protein.	Uncharacterized protein.	0.787
chiPu_0012658	chiPu_0016400	A0A401SUW4	A0A401T5I8	Uncharacterized protein.	HIT-type domain-containing protein.	0.617