STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chiPu_0016823TFIIB-type domain-containing protein. (159 aa)    
Predicted Functional Partners:
chiPu_0007172
Uncharacterized protein.
    
 0.985
chiPu_0005092
DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.
    
 0.984
chiPu_0011032
SANT domain-containing protein.
    
 0.984
chiPu_0023754
Uncharacterized protein.
   
 0.979
chiPu_0013330
Uncharacterized protein; Belongs to the RNA polymerase beta chain family.
   
 0.978
chiPu_0010201
Uncharacterized protein.
   
 0.974
chiPu_0011331
Uncharacterized protein.
   
 0.974
chiPu_0018648
RPOLD domain-containing protein.
    
 0.971
chiPu_0002066
RPOL4c domain-containing protein.
    
 0.964
chiPu_0006500
Uncharacterized protein.
    
 0.958
Your Current Organism:
Chiloscyllium punctatum
NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark
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