chiPu_0023187 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0023187

Uncharacterized protein. (86 aa)

Predicted Functional Partners:

chiPu_0006452

0.877

chiPu_0013252

0.877

chiPu_0027191

0.877

chiPu_0029070

0.877

chiPu_0006120

0.783

chiPu_0020511

0.589

chiPu_0016781

0.589

chiPu_0023674

0.589

chiPu_0000805

0.529

chiPu_0014965

0.517

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chiPu_0000805	chiPu_0006120	A0A401RWA7	A0A401SBH6	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.	0.953
chiPu_0000805	chiPu_0023187	A0A401RWA7	A0A401T8X7	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Uncharacterized protein.	0.529
chiPu_0006120	chiPu_0000805	A0A401SBH6	A0A401RWA7	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.953
chiPu_0006120	chiPu_0023187	A0A401SBH6	A0A401T8X7	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.	Uncharacterized protein.	0.783
chiPu_0006452	chiPu_0016781	A0A401SC87	A0A401T6J2	RHD domain-containing protein.	Uncharacterized protein.	0.921
chiPu_0006452	chiPu_0020511	A0A401SC87	A0A401RGG2	RHD domain-containing protein.	Uncharacterized protein.	0.927
chiPu_0006452	chiPu_0023187	A0A401SC87	A0A401T8X7	RHD domain-containing protein.	Uncharacterized protein.	0.877
chiPu_0006452	chiPu_0023674	A0A401SC87	A0A401TBJ8	RHD domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.921
chiPu_0013252	chiPu_0016781	A0A401SWP7	A0A401T6J2	RHD domain-containing protein.	Uncharacterized protein.	0.976
chiPu_0013252	chiPu_0020511	A0A401SWP7	A0A401RGG2	RHD domain-containing protein.	Uncharacterized protein.	0.929
chiPu_0013252	chiPu_0023187	A0A401SWP7	A0A401T8X7	RHD domain-containing protein.	Uncharacterized protein.	0.877
chiPu_0013252	chiPu_0023674	A0A401SWP7	A0A401TBJ8	RHD domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.921
chiPu_0014965	chiPu_0023187	A0A401T1G5	A0A401T8X7	SET domain-containing protein.	Uncharacterized protein.	0.517
chiPu_0016781	chiPu_0006452	A0A401T6J2	A0A401SC87	Uncharacterized protein.	RHD domain-containing protein.	0.921
chiPu_0016781	chiPu_0013252	A0A401T6J2	A0A401SWP7	Uncharacterized protein.	RHD domain-containing protein.	0.976
chiPu_0016781	chiPu_0023187	A0A401T6J2	A0A401T8X7	Uncharacterized protein.	Uncharacterized protein.	0.589
chiPu_0016781	chiPu_0027191	A0A401T6J2	A0A401TKN2	Uncharacterized protein.	IPT/TIG domain-containing protein.	0.921
chiPu_0016781	chiPu_0029070	A0A401T6J2	A0A401TQS1	Uncharacterized protein.	RHD domain-containing protein.	0.921
chiPu_0020511	chiPu_0006452	A0A401RGG2	A0A401SC87	Uncharacterized protein.	RHD domain-containing protein.	0.927
chiPu_0020511	chiPu_0013252	A0A401RGG2	A0A401SWP7	Uncharacterized protein.	RHD domain-containing protein.	0.929