STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chiPu_0022871Uncharacterized protein. (98 aa)    
Predicted Functional Partners:
chiPu_0005678
RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.
   
 
 0.775
chiPu_0016806
RRM domain-containing protein.
   
 
 0.775
chiPu_0028898
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
     
 0.661
chiPu_0007176
TOG domain-containing protein.
     
 0.648
chiPu_0013129
CPSF_A domain-containing protein.
     
 0.645
chiPu_0017130
Uncharacterized protein; Belongs to the DEAD box helicase family.
    
  0.551
chiPu_0027447
Uncharacterized protein.
    
  0.551
chiPu_0000041
Uncharacterized protein.
  
     0.468
chiPu_0015388
Uncharacterized protein.
  
 
   0.462
chiPu_0022424
Ig-like domain-containing protein.
  
     0.428
Your Current Organism:
Chiloscyllium punctatum
NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.