chiPu_0023397 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0023397

Uncharacterized protein. (75 aa)

Predicted Functional Partners:

chiPu_0005806

0.968

RTCB

0.953

chiPu_0001124

0.928

chiPu_0007176

0.871

chiPu_0013129

0.865

PES1

0.859

chiPu_0001787

0.851

chiPu_0000992

0.847

LSM1

0.845

chiPu_0007776

0.839

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM1	chiPu_0007776	A0A401RVU9	A0A401SFZ7	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Sm domain-containing protein.	0.999
LSM1	chiPu_0023397	A0A401RVU9	A0A401TAL6	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Uncharacterized protein.	0.845
PES1	chiPu_0023397	A0A401RQ63	A0A401TAL6	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.859
RTCB	chiPu_0000992	A0A401T4P2	A0A401RWR9	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	Uncharacterized protein.	0.440
RTCB	chiPu_0001124	A0A401T4P2	A0A401RX73	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	Uncharacterized protein.	0.544
RTCB	chiPu_0005806	A0A401T4P2	A0A401SAG6	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	Uncharacterized protein.	0.980
RTCB	chiPu_0023397	A0A401T4P2	A0A401TAL6	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	Uncharacterized protein.	0.953
chiPu_0000992	RTCB	A0A401RWR9	A0A401T4P2	Uncharacterized protein.	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	0.440
chiPu_0000992	chiPu_0007176	A0A401RWR9	A0A401SE82	Uncharacterized protein.	TOG domain-containing protein.	0.997
chiPu_0000992	chiPu_0007776	A0A401RWR9	A0A401SFZ7	Uncharacterized protein.	Sm domain-containing protein.	0.976
chiPu_0000992	chiPu_0013129	A0A401RWR9	A0A401SW77	Uncharacterized protein.	CPSF_A domain-containing protein.	0.997
chiPu_0000992	chiPu_0023397	A0A401RWR9	A0A401TAL6	Uncharacterized protein.	Uncharacterized protein.	0.847
chiPu_0001124	RTCB	A0A401RX73	A0A401T4P2	Uncharacterized protein.	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	0.544
chiPu_0001124	chiPu_0005806	A0A401RX73	A0A401SAG6	Uncharacterized protein.	Uncharacterized protein.	0.952
chiPu_0001124	chiPu_0023397	A0A401RX73	A0A401TAL6	Uncharacterized protein.	Uncharacterized protein.	0.928
chiPu_0001787	chiPu_0007176	A0A401RZ11	A0A401SE82	Uncharacterized protein.	TOG domain-containing protein.	0.825
chiPu_0001787	chiPu_0013129	A0A401RZ11	A0A401SW77	Uncharacterized protein.	CPSF_A domain-containing protein.	0.789
chiPu_0001787	chiPu_0023397	A0A401RZ11	A0A401TAL6	Uncharacterized protein.	Uncharacterized protein.	0.851
chiPu_0005806	RTCB	A0A401SAG6	A0A401T4P2	Uncharacterized protein.	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	0.980
chiPu_0005806	chiPu_0001124	A0A401SAG6	A0A401RX73	Uncharacterized protein.	Uncharacterized protein.	0.952