chiPu_0024005 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0024005

CBFD_NFYB_HMF domain-containing protein. (67 aa)

Predicted Functional Partners:

chiPu_0012555

0.998

chiPu_0010764

0.990

chiPu_0016356

0.989

chiPu_0002558

0.937

chiPu_0004971

0.932

chiPu_0010976

0.932

chiPu_0015275

0.841

chiPu_0003742

0.823

chiPu_0007448

0.774

chiPu_0007450

0.774

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chiPu_0002558	chiPu_0004971	A0A401S1A9	A0A401S829	Uncharacterized protein.	Uncharacterized protein.	0.978
chiPu_0002558	chiPu_0007448	A0A401S1A9	A0A401SF06	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.890
chiPu_0002558	chiPu_0007450	A0A401S1A9	A0A401SF84	Uncharacterized protein.	Uncharacterized protein.	0.890
chiPu_0002558	chiPu_0010976	A0A401S1A9	A0A401SQ32	Uncharacterized protein.	Uncharacterized protein.	0.978
chiPu_0002558	chiPu_0012555	A0A401S1A9	A0A401SUM1	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.968
chiPu_0002558	chiPu_0024005	A0A401S1A9	A0A401TCR5	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.937
chiPu_0003742	chiPu_0004971	A0A401S4M0	A0A401S829	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	Uncharacterized protein.	0.406
chiPu_0003742	chiPu_0007450	A0A401S4M0	A0A401SF84	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	Uncharacterized protein.	0.481
chiPu_0003742	chiPu_0010764	A0A401S4M0	A0A401SPK6	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	CBFD_NFYB_HMF domain-containing protein.	0.776
chiPu_0003742	chiPu_0010976	A0A401S4M0	A0A401SQ32	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	Uncharacterized protein.	0.406
chiPu_0003742	chiPu_0012555	A0A401S4M0	A0A401SUM1	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	CBFD_NFYB_HMF domain-containing protein.	0.999
chiPu_0003742	chiPu_0015275	A0A401S4M0	A0A401T2G6	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.999
chiPu_0003742	chiPu_0024005	A0A401S4M0	A0A401TCR5	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	CBFD_NFYB_HMF domain-containing protein.	0.823
chiPu_0004971	chiPu_0002558	A0A401S829	A0A401S1A9	Uncharacterized protein.	Uncharacterized protein.	0.978
chiPu_0004971	chiPu_0003742	A0A401S829	A0A401S4M0	Uncharacterized protein.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.406
chiPu_0004971	chiPu_0012555	A0A401S829	A0A401SUM1	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.954
chiPu_0004971	chiPu_0015275	A0A401S829	A0A401T2G6	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.513
chiPu_0004971	chiPu_0024005	A0A401S829	A0A401TCR5	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.932
chiPu_0007448	chiPu_0002558	A0A401SF06	A0A401S1A9	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.890
chiPu_0007448	chiPu_0007450	A0A401SF06	A0A401SF84	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.949