chiPu_0024014 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0024014

Uncharacterized protein. (394 aa)

Predicted Functional Partners:

chiPu_0015567

0.898

chiPu_0001117

0.885

KATNAL2

0.847

chiPu_0001167

0.831

chiPu_0005813

0.831

chiPu_0007498

0.831

chiPu_0016732

0.831

chiPu_0027076

0.831

chiPu_0028024

0.831

chiPu_0028666

0.831

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KATNAL2	chiPu_0001117	A0A401STR6	A0A401RXA5	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.840
KATNAL2	chiPu_0001167	A0A401STR6	A0A401RXA0	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	TPR_REGION domain-containing protein.	0.698
KATNAL2	chiPu_0005813	A0A401STR6	A0A401SAG3	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.952
KATNAL2	chiPu_0015567	A0A401STR6	A0A401T3A8	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Uncharacterized protein.	0.847
KATNAL2	chiPu_0016732	A0A401STR6	A0A401T6G7	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.950
KATNAL2	chiPu_0024014	A0A401STR6	A0A401TD07	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Uncharacterized protein.	0.847
KATNAL2	chiPu_0027076	A0A401STR6	A0A401TK68	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Prot_ATP_ID_OB domain-containing protein.	0.950
KATNAL2	chiPu_0028024	A0A401STR6	A0A401TNL2	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Uncharacterized protein.	0.950
KATNAL2	chiPu_0028666	A0A401STR6	A0A401TP47	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	ATPase_AAA_core domain-containing protein.	0.950
chiPu_0001117	KATNAL2	A0A401RXA5	A0A401STR6	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.840
chiPu_0001117	chiPu_0001167	A0A401RXA5	A0A401RXA0	UBIQUITIN_CONJUGAT_2 domain-containing protein.	TPR_REGION domain-containing protein.	0.667
chiPu_0001117	chiPu_0005813	A0A401RXA5	A0A401SAG3	UBIQUITIN_CONJUGAT_2 domain-containing protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.592
chiPu_0001117	chiPu_0015567	A0A401RXA5	A0A401T3A8	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.885
chiPu_0001117	chiPu_0016732	A0A401RXA5	A0A401T6G7	UBIQUITIN_CONJUGAT_2 domain-containing protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.592
chiPu_0001117	chiPu_0024014	A0A401RXA5	A0A401TD07	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.885
chiPu_0001117	chiPu_0027076	A0A401RXA5	A0A401TK68	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Prot_ATP_ID_OB domain-containing protein.	0.592
chiPu_0001117	chiPu_0028024	A0A401RXA5	A0A401TNL2	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.592
chiPu_0001117	chiPu_0028666	A0A401RXA5	A0A401TP47	UBIQUITIN_CONJUGAT_2 domain-containing protein.	ATPase_AAA_core domain-containing protein.	0.592
chiPu_0001167	KATNAL2	A0A401RXA0	A0A401STR6	TPR_REGION domain-containing protein.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.698
chiPu_0001167	chiPu_0001117	A0A401RXA0	A0A401RXA5	TPR_REGION domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.667