STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chiPu_0025410Uncharacterized protein. (96 aa)    
Predicted Functional Partners:
chiPu_0002439
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.853
chiPu_0003581
KOG2701 domain-containing protein.
    
 
 0.846
chiPu_0016235
COMM domain-containing protein.
    
 
 0.840
chiPu_0002336
COMM domain-containing protein.
    
 
 0.828
chiPu_0018173
COMM domain-containing protein.
    
 
 0.813
chiPu_0000121
COMM domain-containing protein.
    
 
 0.812
chiPu_0024809
COMM domain-containing protein.
    
 
 0.789
chiPu_0012505
UDENN domain-containing protein.
    
 
 0.777
chiPu_0002949
COMM domain-containing protein.
    
 
 0.755
chiPu_0003815
Uncharacterized protein.
   
 
 0.710
Your Current Organism:
Chiloscyllium punctatum
NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark
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