STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chiPu_0026818Uncharacterized protein. (91 aa)    
Predicted Functional Partners:
chiPu_0007176
TOG domain-containing protein.
   
 0.964
chiPu_0022606
Uncharacterized protein.
   
 0.963
chiPu_0013129
CPSF_A domain-containing protein.
   
 0.961
chiPu_0002453
Uncharacterized protein.
   
 0.960
chiPu_0019625
Uncharacterized protein.
    
 0.959
chiPu_0028898
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
    
 0.959
chiPu_0002220
Matrin-type domain-containing protein.
   
 0.950
chiPu_0002361
Uncharacterized protein.
   
 0.939
chiPu_0002671
Small nuclear ribonucleoprotein Sm D3.
   
 0.939
chiPu_0008008
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 0.937
Your Current Organism:
Chiloscyllium punctatum
NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark
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