chiPu_0028317 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0028317

Uncharacterized protein. (96 aa)

Predicted Functional Partners:

chiPu_0002188

0.729

PAFAH1B1

0.729

chiPu_0016636

0.613

chiPu_0022256

0.527

chiPu_0002283

0.516

chiPu_0023483

0.516

chiPu_0001233

0.514

chiPu_0027548

0.509

chiPu_0026810

0.469

chiPu_0021507

0.466

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PAFAH1B1	chiPu_0021507	A0A401S2K4	A0A401RGL9	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	Uncharacterized protein.	0.729
PAFAH1B1	chiPu_0022256	A0A401S2K4	A0A401RG24	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	Uncharacterized protein.	0.729
PAFAH1B1	chiPu_0023483	A0A401S2K4	A0A401TAR9	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	Laminin EGF-like domain-containing protein.	0.729
PAFAH1B1	chiPu_0026810	A0A401S2K4	A0A401TIS9	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	Uncharacterized protein.	0.729
PAFAH1B1	chiPu_0027548	A0A401S2K4	A0A401TL84	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	Uncharacterized protein.	0.729
PAFAH1B1	chiPu_0028317	A0A401S2K4	A0A401TMW3	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	Uncharacterized protein.	0.729
chiPu_0001233	chiPu_0021507	A0A401RXH5	A0A401RGL9	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	Uncharacterized protein.	0.514
chiPu_0001233	chiPu_0023483	A0A401RXH5	A0A401TAR9	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	Laminin EGF-like domain-containing protein.	0.514
chiPu_0001233	chiPu_0026810	A0A401RXH5	A0A401TIS9	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	Uncharacterized protein.	0.514
chiPu_0001233	chiPu_0027548	A0A401RXH5	A0A401TL84	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	Uncharacterized protein.	0.514
chiPu_0001233	chiPu_0028317	A0A401RXH5	A0A401TMW3	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	Uncharacterized protein.	0.514
chiPu_0002188	chiPu_0021507	A0A401S0D6	A0A401RGL9	Uncharacterized protein.	Uncharacterized protein.	0.729
chiPu_0002188	chiPu_0022256	A0A401S0D6	A0A401RG24	Uncharacterized protein.	Uncharacterized protein.	0.729
chiPu_0002188	chiPu_0023483	A0A401S0D6	A0A401TAR9	Uncharacterized protein.	Laminin EGF-like domain-containing protein.	0.729
chiPu_0002188	chiPu_0026810	A0A401S0D6	A0A401TIS9	Uncharacterized protein.	Uncharacterized protein.	0.729
chiPu_0002188	chiPu_0027548	A0A401S0D6	A0A401TL84	Uncharacterized protein.	Uncharacterized protein.	0.729
chiPu_0002188	chiPu_0028317	A0A401S0D6	A0A401TMW3	Uncharacterized protein.	Uncharacterized protein.	0.729
chiPu_0002283	chiPu_0021507	A0A401S0E1	A0A401RGL9	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	Uncharacterized protein.	0.516
chiPu_0002283	chiPu_0023483	A0A401S0E1	A0A401TAR9	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	Laminin EGF-like domain-containing protein.	0.516
chiPu_0002283	chiPu_0026810	A0A401S0E1	A0A401TIS9	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	Uncharacterized protein.	0.516