chiPu_0028007 protein (Chiloscyllium punctatum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

chiPu_0028007

Uncharacterized protein. (244 aa)

Predicted Functional Partners:

chiPu_0013248

0.943

chiPu_0018892

0.928

chiPu_0020096

0.927

chiPu_0013984

0.927

chiPu_0016413

0.926

chiPu_0020930

0.925

chiPu_0008691

0.919

chiPu_0001179

0.916

chiPu_0008711

0.910

chiPu_0014987

0.910

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chiPu_0001179	chiPu_0008691	A0A401RXG8	A0A401SIR5	Uncharacterized protein.	Uncharacterized protein.	0.999
chiPu_0001179	chiPu_0008711	A0A401RXG8	A0A401SIU5	Uncharacterized protein.	Uncharacterized protein.	0.999
chiPu_0001179	chiPu_0013248	A0A401RXG8	A0A401SWI7	Uncharacterized protein.	Uncharacterized protein.	0.998
chiPu_0001179	chiPu_0013984	A0A401RXG8	A0A401SYN4	Uncharacterized protein.	RPOL4c domain-containing protein.	0.999
chiPu_0001179	chiPu_0014987	A0A401RXG8	A0A401T1G2	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.999
chiPu_0001179	chiPu_0016413	A0A401RXG8	A0A401T5N6	Uncharacterized protein.	Uncharacterized protein.	0.999
chiPu_0001179	chiPu_0018892	A0A401RXG8	A0A401RQ50	Uncharacterized protein.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.994
chiPu_0001179	chiPu_0020096	A0A401RXG8	A0A401RU29	Uncharacterized protein.	RPOLD domain-containing protein.	0.999
chiPu_0001179	chiPu_0020930	A0A401RXG8	A0A401RLA9	Uncharacterized protein.	S1 domain-containing protein.	0.999
chiPu_0001179	chiPu_0028007	A0A401RXG8	A0A401TN60	Uncharacterized protein.	Uncharacterized protein.	0.916
chiPu_0008691	chiPu_0001179	A0A401SIR5	A0A401RXG8	Uncharacterized protein.	Uncharacterized protein.	0.999
chiPu_0008691	chiPu_0008711	A0A401SIR5	A0A401SIU5	Uncharacterized protein.	Uncharacterized protein.	0.999
chiPu_0008691	chiPu_0013248	A0A401SIR5	A0A401SWI7	Uncharacterized protein.	Uncharacterized protein.	0.998
chiPu_0008691	chiPu_0013984	A0A401SIR5	A0A401SYN4	Uncharacterized protein.	RPOL4c domain-containing protein.	0.999
chiPu_0008691	chiPu_0014987	A0A401SIR5	A0A401T1G2	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.999
chiPu_0008691	chiPu_0016413	A0A401SIR5	A0A401T5N6	Uncharacterized protein.	Uncharacterized protein.	0.999
chiPu_0008691	chiPu_0018892	A0A401SIR5	A0A401RQ50	Uncharacterized protein.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.998
chiPu_0008691	chiPu_0020096	A0A401SIR5	A0A401RU29	Uncharacterized protein.	RPOLD domain-containing protein.	0.999
chiPu_0008691	chiPu_0020930	A0A401SIR5	A0A401RLA9	Uncharacterized protein.	S1 domain-containing protein.	0.999
chiPu_0008691	chiPu_0028007	A0A401SIR5	A0A401TN60	Uncharacterized protein.	Uncharacterized protein.	0.919