chiPu_0032043 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0032043

Uncharacterized protein. (193 aa)

Predicted Functional Partners:

chiPu_0033253

0.864

chiPu_0010764

0.775

chiPu_0018165

0.748

chiPu_0024005

0.748

chiPu_0018394

0.693

chiPu_0018395

0.693

chiPu_0025542

0.693

chiPu_0016215

0.688

chiPu_0020417

0.656

chiPu_0002566

0.656

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chiPu_0002566	chiPu_0032043	A0A401S1B2	A0A401TYD4	Fork-head domain-containing protein.	Uncharacterized protein.	0.656
chiPu_0010764	chiPu_0018165	A0A401SPK6	A0A401RLM0	CBFD_NFYB_HMF domain-containing protein.	CBFD_NFYB_HMF domain-containing protein.	0.999
chiPu_0010764	chiPu_0024005	A0A401SPK6	A0A401TCR5	CBFD_NFYB_HMF domain-containing protein.	CBFD_NFYB_HMF domain-containing protein.	0.990
chiPu_0010764	chiPu_0032043	A0A401SPK6	A0A401TYD4	CBFD_NFYB_HMF domain-containing protein.	Uncharacterized protein.	0.775
chiPu_0016215	chiPu_0032043	A0A401T4Z9	A0A401TYD4	Uncharacterized protein.	Uncharacterized protein.	0.688
chiPu_0018165	chiPu_0010764	A0A401RLM0	A0A401SPK6	CBFD_NFYB_HMF domain-containing protein.	CBFD_NFYB_HMF domain-containing protein.	0.999
chiPu_0018165	chiPu_0032043	A0A401RLM0	A0A401TYD4	CBFD_NFYB_HMF domain-containing protein.	Uncharacterized protein.	0.748
chiPu_0018394	chiPu_0032043	A0A401RMX0	A0A401TYD4	MADS-box domain-containing protein.	Uncharacterized protein.	0.693
chiPu_0018395	chiPu_0032043	A0A401RN08	A0A401TYD4	Uncharacterized protein.	Uncharacterized protein.	0.693
chiPu_0020417	chiPu_0032043	A0A401RFE9	A0A401TYD4	Fork-head domain-containing protein.	Uncharacterized protein.	0.656
chiPu_0024005	chiPu_0010764	A0A401TCR5	A0A401SPK6	CBFD_NFYB_HMF domain-containing protein.	CBFD_NFYB_HMF domain-containing protein.	0.990
chiPu_0024005	chiPu_0032043	A0A401TCR5	A0A401TYD4	CBFD_NFYB_HMF domain-containing protein.	Uncharacterized protein.	0.748
chiPu_0025542	chiPu_0032043	A0A401TGY0	A0A401TYD4	MADS-box domain-containing protein.	Uncharacterized protein.	0.693
chiPu_0032043	chiPu_0002566	A0A401TYD4	A0A401S1B2	Uncharacterized protein.	Fork-head domain-containing protein.	0.656
chiPu_0032043	chiPu_0010764	A0A401TYD4	A0A401SPK6	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.775
chiPu_0032043	chiPu_0016215	A0A401TYD4	A0A401T4Z9	Uncharacterized protein.	Uncharacterized protein.	0.688
chiPu_0032043	chiPu_0018165	A0A401TYD4	A0A401RLM0	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.748
chiPu_0032043	chiPu_0018394	A0A401TYD4	A0A401RMX0	Uncharacterized protein.	MADS-box domain-containing protein.	0.693
chiPu_0032043	chiPu_0018395	A0A401TYD4	A0A401RN08	Uncharacterized protein.	Uncharacterized protein.	0.693
chiPu_0032043	chiPu_0020417	A0A401TYD4	A0A401RFE9	Uncharacterized protein.	Fork-head domain-containing protein.	0.656