STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chiPu_0031833HTH lysR-type domain-containing protein. (189 aa)    
Predicted Functional Partners:
chiPu_0004025
Uncharacterized protein.
    
   0.698
chiPu_0004059
Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.
    
 
 0.693
chiPu_0004308
Ribosomal_L18e/L15P domain-containing protein.
   
   0.691
chiPu_0018019
Uncharacterized protein.
    
 
 0.687
chiPu_0017284
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
    
   0.684
chiPu_0021657
Uncharacterized protein.
    
   0.684
chiPu_0020788
Uncharacterized protein.
    
   0.684
chiPu_0018908
Uncharacterized protein.
    
   0.684
chiPu_0001164
Uncharacterized protein.
    
   0.684
chiPu_0001884
Ribosomal_S10 domain-containing protein.
    
   0.684
Your Current Organism:
Chiloscyllium punctatum
NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.