STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chiPu_0032418SpoU_sub_bind domain-containing protein. (170 aa)    
Predicted Functional Partners:
chiPu_0016180
Uncharacterized protein.
   
 
 0.888
chiPu_0001164
Uncharacterized protein.
   
 
 0.880
chiPu_0006995
Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
  
 
 0.877
chiPu_0004511
Uncharacterized protein.
   
   0.844
chiPu_0008876
TrmE-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
   
 
 0.843
chiPu_0000496
EngB-type G domain-containing protein.
  
 
 0.832
chiPu_0026951
Ribosomal_L11 domain-containing protein.
   
 
 0.812
chiPu_0008597
PseudoU_synth_2 domain-containing protein.
  
 
 0.803
chiPu_0019388
Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.
  
 
 0.793
chiPu_0009259
Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.
  
 
 0.793
Your Current Organism:
Chiloscyllium punctatum
NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark
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