chiPu_0033746 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0033746

Uncharacterized protein. (147 aa)

Predicted Functional Partners:

chiPu_0015376

0.983

chiPu_0024044

0.983

chiPu_0018492

0.953

chiPu_0012082

0.953

chiPu_0012083

0.953

chiPu_0031494

0.952

chiPu_0032396

0.936

chiPu_0033864

0.936

chiPu_0032927

0.913

chiPu_0006166

0.905

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chiPu_0006166	chiPu_0012082	A0A401SBL0	A0A401STB7	Pyruvate carboxyltransferase domain-containing protein.	Uncharacterized protein.	0.924
chiPu_0006166	chiPu_0012083	A0A401SBL0	A0A401STB9	Pyruvate carboxyltransferase domain-containing protein.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.924
chiPu_0006166	chiPu_0015376	A0A401SBL0	A0A401T2I5	Pyruvate carboxyltransferase domain-containing protein.	Uncharacterized protein.	0.422
chiPu_0006166	chiPu_0018492	A0A401SBL0	A0A401RNN1	Pyruvate carboxyltransferase domain-containing protein.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.924
chiPu_0006166	chiPu_0024044	A0A401SBL0	A0A401TC83	Pyruvate carboxyltransferase domain-containing protein.	G6PD_C domain-containing protein.	0.422
chiPu_0006166	chiPu_0032396	A0A401SBL0	A0A401TZU8	Pyruvate carboxyltransferase domain-containing protein.	Aconitase domain-containing protein.	0.952
chiPu_0006166	chiPu_0033746	A0A401SBL0	A0A401U3P6	Pyruvate carboxyltransferase domain-containing protein.	Uncharacterized protein.	0.905
chiPu_0006166	chiPu_0033864	A0A401SBL0	A0A401U3U6	Pyruvate carboxyltransferase domain-containing protein.	Aconitase_C domain-containing protein.	0.952
chiPu_0012082	chiPu_0006166	A0A401STB7	A0A401SBL0	Uncharacterized protein.	Pyruvate carboxyltransferase domain-containing protein.	0.924
chiPu_0012082	chiPu_0012083	A0A401STB7	A0A401STB9	Uncharacterized protein.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.473
chiPu_0012082	chiPu_0015376	A0A401STB7	A0A401T2I5	Uncharacterized protein.	Uncharacterized protein.	0.566
chiPu_0012082	chiPu_0018492	A0A401STB7	A0A401RNN1	Uncharacterized protein.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.828
chiPu_0012082	chiPu_0024044	A0A401STB7	A0A401TC83	Uncharacterized protein.	G6PD_C domain-containing protein.	0.566
chiPu_0012082	chiPu_0031494	A0A401STB7	A0A401TYD3	Uncharacterized protein.	LeuA_dimer domain-containing protein.	0.955
chiPu_0012082	chiPu_0032396	A0A401STB7	A0A401TZU8	Uncharacterized protein.	Aconitase domain-containing protein.	0.595
chiPu_0012082	chiPu_0032927	A0A401STB7	A0A401U0L6	Uncharacterized protein.	Uncharacterized protein; Belongs to the ketol-acid reductoisomerase family.	0.702
chiPu_0012082	chiPu_0033746	A0A401STB7	A0A401U3P6	Uncharacterized protein.	Uncharacterized protein.	0.953
chiPu_0012082	chiPu_0033864	A0A401STB7	A0A401U3U6	Uncharacterized protein.	Aconitase_C domain-containing protein.	0.595
chiPu_0012083	chiPu_0006166	A0A401STB9	A0A401SBL0	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	Pyruvate carboxyltransferase domain-containing protein.	0.924
chiPu_0012083	chiPu_0012082	A0A401STB9	A0A401STB7	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein.	0.473