STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY48908.1Helix-turn-helix domain-containing protein. (112 aa)    
Predicted Functional Partners:
SDY48937.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
 
    0.903
SDY72447.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
     0.795
SDY48964.1
Lysophospholipase, alpha-beta hydrolase superfamily.
       0.773
SDZ43789.1
Transcriptional regulator, ArsR family.
  
     0.737
SDZ60564.1
Transcriptional regulator, ArsR family.
  
     0.651
SDY48898.1
Hypothetical protein.
       0.551
SDZ21857.1
Transcriptional regulator, ArsR family.
  
     0.532
Your Current Organism:
Asanoa ishikariensis
NCBI taxonomy Id: 137265
Other names: A. ishikariensis, Asanoa ishikariensis Lee and Hah 2002, Catellatispora ishikariense, Catellatospora ishikariense, DSM 44718, IFO 14551, IMSNU 22004, JCM 11895, NBRC 14551, strain 6432-C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.