STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY59022.1Transcriptional regulator, LacI family. (345 aa)    
Predicted Functional Partners:
SDZ59863.1
Non-ribosomal peptide synthase domain TIGR01720.
    
   0.907
SDY97681.1
Glutamate synthase (NADH) large subunit.
    
 
 0.842
SDY59056.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
     0.787
SDY59050.1
Hypothetical protein.
 
     0.687
SDZ47067.1
Amino acid adenylation domain-containing protein.
    
   0.553
SDZ47170.1
Non-ribosomal peptide synthetase component F.
    
   0.553
SDY59172.1
F5/8 type C domain-containing protein.
 
     0.542
SDY59085.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
     0.537
SDY59095.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
     0.528
SDZ47182.1
Acyl transferase domain-containing protein.
    
   0.508
Your Current Organism:
Asanoa ishikariensis
NCBI taxonomy Id: 137265
Other names: A. ishikariensis, Asanoa ishikariensis Lee and Hah 2002, Catellatispora ishikariense, Catellatospora ishikariense, DSM 44718, IFO 14551, IMSNU 22004, JCM 11895, NBRC 14551, strain 6432-C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.