STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY68257.1Transcriptional regulator, TetR family. (222 aa)    
Predicted Functional Partners:
SDZ24436.1
Cobalamin-independent synthase, Catalytic domain.
  
 
   0.579
SDY68236.1
Protein of unknown function.
       0.574
SDY68272.1
Hypothetical protein.
       0.562
pup
Prokaryotic ubiquitin-like protein Pup; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation.
  
     0.555
SDY68286.1
Pimeloyl-ACP methyl ester carboxylesterase.
       0.506
SDZ13539.1
Putative sensory transduction regulator.
  
     0.477
SDZ53066.1
Proteasome accessory factor A.
  
     0.459
SDY92895.1
Protein of unknown function.
  
     0.444
SDZ65865.1
NUDIX domain-containing protein.
  
     0.417
SDZ66487.1
Arsenite efflux ATP-binding protein ArsA.
  
     0.409
Your Current Organism:
Asanoa ishikariensis
NCBI taxonomy Id: 137265
Other names: A. ishikariensis, Asanoa ishikariensis Lee and Hah 2002, Catellatispora ishikariense, Catellatospora ishikariense, DSM 44718, IFO 14551, IMSNU 22004, JCM 11895, NBRC 14551, strain 6432-C
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