STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY80232.1RNA polymerase sigma-70 factor, ECF subfamily. (164 aa)    
Predicted Functional Partners:
SDY80190.1
Protein-disulfide isomerase.
  
    0.814
SDY80170.1
Hypothetical protein; Manually curated.
       0.802
SDZ42739.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.763
SDY80243.1
Predicted anti-sigma-YlaC factor YlaD, contains Zn-finger domain.
 
   0.757
SDZ15849.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.751
SDZ25588.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.731
SDY62603.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.717
SDZ65143.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.708
SDZ61094.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.694
SDZ27407.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.682
Your Current Organism:
Asanoa ishikariensis
NCBI taxonomy Id: 137265
Other names: A. ishikariensis, Asanoa ishikariensis Lee and Hah 2002, Catellatispora ishikariense, Catellatospora ishikariense, DSM 44718, IFO 14551, IMSNU 22004, JCM 11895, NBRC 14551, strain 6432-C
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.