STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY82071.1tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA. (134 aa)    
Predicted Functional Partners:
SDY82093.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.773
SDY82110.1
Uncharacterized conserved protein.
       0.762
SDY82057.1
NADPH2:quinone reductase.
       0.664
SDY82128.1
Protocatechuate 3,4-dioxygenase beta subunit.
       0.597
SDZ54435.1
Formate dehydrogenase beta subunit.
  
  
  0.597
SDY82152.1
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein.
 
    0.564
SDZ55346.1
7, 8-dihydropterin-6-yl-methyl-4-(beta-D- ribofuranosyl)aminobenzene 5'-phosphate synthase.
 
     0.529
SDY82172.1
3-hydroxyisobutyrate dehydrogenase.
       0.499
SDY82190.1
Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily.
       0.499
SDY82212.1
Dimethylargininase.
  
    0.441
Your Current Organism:
Asanoa ishikariensis
NCBI taxonomy Id: 137265
Other names: A. ishikariensis, Asanoa ishikariensis Lee and Hah 2002, Catellatispora ishikariense, Catellatospora ishikariense, DSM 44718, IFO 14551, IMSNU 22004, JCM 11895, NBRC 14551, strain 6432-C
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