Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDY82649.1 | SDY82666.1 | SAMN05421684_1752 | SAMN05421684_1753 | Stage II sporulation protein E (SpoIIE). | DNA-binding transcriptional regulator, MarR family; Manually curated. | 0.764 |
SDY82666.1 | SDY82649.1 | SAMN05421684_1753 | SAMN05421684_1752 | DNA-binding transcriptional regulator, MarR family; Manually curated. | Stage II sporulation protein E (SpoIIE). | 0.764 |
SDY82666.1 | SDZ33193.1 | SAMN05421684_1753 | SAMN05421684_4585 | DNA-binding transcriptional regulator, MarR family; Manually curated. | Stage II sporulation protein E (SpoIIE). | 0.556 |
SDY82666.1 | coaE | SAMN05421684_1753 | SAMN05421684_2733 | DNA-binding transcriptional regulator, MarR family; Manually curated. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.465 |
SDZ33193.1 | SDY82666.1 | SAMN05421684_4585 | SAMN05421684_1753 | Stage II sporulation protein E (SpoIIE). | DNA-binding transcriptional regulator, MarR family; Manually curated. | 0.556 |
coaE | SDY82666.1 | SAMN05421684_2733 | SAMN05421684_1753 | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | DNA-binding transcriptional regulator, MarR family; Manually curated. | 0.465 |