STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY90830.1RNA polymerase sigma-70 factor, ECF subfamily. (304 aa)    
Predicted Functional Partners:
SDZ45971.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.716
SDY90818.1
SnoaL-like domain-containing protein.
 
     0.693
SDY80232.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.648
SDZ34288.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.642
SDY90849.1
Aquaporin Z; Belongs to the MIP/aquaporin (TC 1.A.8) family.
       0.639
SDZ25588.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.636
SDY73361.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.602
SDZ59199.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.597
SDZ46064.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.596
SDZ42739.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.573
Your Current Organism:
Asanoa ishikariensis
NCBI taxonomy Id: 137265
Other names: A. ishikariensis, Asanoa ishikariensis Lee and Hah 2002, Catellatispora ishikariense, Catellatospora ishikariense, DSM 44718, IFO 14551, IMSNU 22004, JCM 11895, NBRC 14551, strain 6432-C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.