STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY98345.1Cell wall-associated hydrolase, NlpC family. (328 aa)    
Predicted Functional Partners:
SDY96660.1
NlpC/P60 family protein.
  
     0.712
SDY98362.1
L-alanine-DL-glutamate epimerase.
 
    0.644
SDY90469.1
Membrane carboxypeptidase (penicillin-binding protein).
  
   
 0.512
SDY51686.1
Membrane carboxypeptidase (penicillin-binding protein).
  
   
 0.502
SDY68049.1
NlpC/P60 family protein.
 
   
0.436
SDY83133.1
Cell wall-associated hydrolase, NlpC family.
 
   
0.436
SDY49164.1
Cell wall-associated hydrolase, NlpC family.
 
   
0.415
Your Current Organism:
Asanoa ishikariensis
NCBI taxonomy Id: 137265
Other names: A. ishikariensis, Asanoa ishikariensis Lee and Hah 2002, Catellatispora ishikariense, Catellatospora ishikariense, DSM 44718, IFO 14551, IMSNU 22004, JCM 11895, NBRC 14551, strain 6432-C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.