STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ00414.1DNA-binding transcriptional regulator YhcF, GntR family. (138 aa)    
Predicted Functional Partners:
SDZ00429.1
ABC-2 type transport system ATP-binding protein.
 
    0.960
SDZ00447.1
Hypothetical protein.
 
     0.956
SDY75024.1
Nicotinamide-nucleotide adenylyltransferase, NadR type.
   
    0.827
SDZ00395.1
Predicted amidohydrolase.
       0.531
SDZ00461.1
Putative hydrolase of the HAD superfamily.
       0.491
SDZ62018.1
GntR family transcriptional regulator.
  
     0.410
SDZ00381.1
Thioesterase-like superfamily protein.
       0.402
SDZ27555.1
GntR family transcriptional regulator.
  
     0.402
Your Current Organism:
Asanoa ishikariensis
NCBI taxonomy Id: 137265
Other names: A. ishikariensis, Asanoa ishikariensis Lee and Hah 2002, Catellatispora ishikariense, Catellatospora ishikariense, DSM 44718, IFO 14551, IMSNU 22004, JCM 11895, NBRC 14551, strain 6432-C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.