STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ23331.1Regulatory protein, luxR family. (889 aa)    
Predicted Functional Partners:
SDY61048.1
Signal transduction histidine kinase.
   
 0.946
SDZ65338.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.792
SDY67743.1
HAMP domain-containing protein.
    
 0.755
SDZ45034.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.753
SDZ50852.1
Transcriptional regulator, LuxR family.
 
 
0.710
SDY52978.1
PAS/PAC sensor signal transduction histidine kinase.
  
 0.709
SDZ63670.1
HD domain-containing protein.
 
 
  0.704
SDZ52038.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 
 
 0.699
SDZ15363.1
Regulatory protein, luxR family.
 
 
0.695
SDZ46623.1
Regulatory protein, luxR family.
 
 
0.681
Your Current Organism:
Asanoa ishikariensis
NCBI taxonomy Id: 137265
Other names: A. ishikariensis, Asanoa ishikariensis Lee and Hah 2002, Catellatispora ishikariense, Catellatospora ishikariense, DSM 44718, IFO 14551, IMSNU 22004, JCM 11895, NBRC 14551, strain 6432-C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.