STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ29645.1Pectate lyase. (517 aa)    
Predicted Functional Partners:
SDZ29631.1
Pectate lyase.
 
  
 
0.934
SDZ59931.1
Ricin-type beta-trefoil lectin domain-like.
 
     0.715
SDZ59945.1
Beta-xylosidase.
  
     0.700
SDZ59921.1
Hypothetical protein.
  
     0.695
SDZ52018.1
Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.685
SDZ59915.1
Carbohydrate binding domain-containing protein.
  
     0.684
SDY82496.1
Cellulose 1,4-beta-cellobiosidase; Belongs to the glycosyl hydrolase family 6.
  
  
  0.676
SDZ30735.1
Mannan endo-1,4-beta-mannosidase.
  
  
  0.655
SDZ46512.1
Endo-1,4-beta-xylanase.
  
     0.654
SDZ29570.1
Oxidoreductase family, C-terminal alpha/beta domain.
 
     0.648
Your Current Organism:
Asanoa ishikariensis
NCBI taxonomy Id: 137265
Other names: A. ishikariensis, Asanoa ishikariensis Lee and Hah 2002, Catellatispora ishikariense, Catellatospora ishikariense, DSM 44718, IFO 14551, IMSNU 22004, JCM 11895, NBRC 14551, strain 6432-C
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