STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ32767.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (229 aa)    
Predicted Functional Partners:
SDY52978.1
PAS/PAC sensor signal transduction histidine kinase.
 
 0.990
SDZ32778.1
Signal transduction histidine kinase.
 
  0.979
SDY61048.1
Signal transduction histidine kinase.
 
0.942
SDZ28351.1
Signal transduction histidine kinase.
 
 0.926
SDZ13694.1
Two-component system, OmpR family, sensor histidine kinase SenX3.
 0.925
SDZ18420.1
Signal transduction histidine kinase.
 
 0.918
SDZ19950.1
Two-component system, OmpR family, sensor kinase.
 0.894
SDZ21554.1
Two-component system, OmpR family, sensor histidine kinase MtrB.
  
 0.891
SDY75273.1
Two-component system, OmpR family, sensor histidine kinase MtrB.
 
 0.887
SDZ48189.1
Two-component system, OmpR family, sensor kinase.
 
 0.887
Your Current Organism:
Asanoa ishikariensis
NCBI taxonomy Id: 137265
Other names: A. ishikariensis, Asanoa ishikariensis Lee and Hah 2002, Catellatispora ishikariense, Catellatospora ishikariense, DSM 44718, IFO 14551, IMSNU 22004, JCM 11895, NBRC 14551, strain 6432-C
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