STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ33858.1Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family. (391 aa)    
Predicted Functional Partners:
SDZ33803.1
Urate oxidase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
 
     0.947
SDZ33866.1
Allantoinase.
 
    0.945
SDZ33794.1
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase.
 
     0.940
alc
Allantoicase; Belongs to the allantoicase family.
 
     0.913
SDZ33826.1
Cytosine/adenosine deaminase.
 
     0.854
SDZ66125.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.814
SDZ33812.1
CO or xanthine dehydrogenase, FAD-binding subunit.
 
     0.803
SDZ33848.1
Xanthine dehydrogenase, molybdenum binding subunit apoprotein.
 
     0.801
SDZ33789.1
Nicotine blue oxidoreductase.
       0.773
SDZ33817.1
Carbon-monoxide dehydrogenase small subunit.
       0.773
Your Current Organism:
Asanoa ishikariensis
NCBI taxonomy Id: 137265
Other names: A. ishikariensis, Asanoa ishikariensis Lee and Hah 2002, Catellatispora ishikariense, Catellatospora ishikariense, DSM 44718, IFO 14551, IMSNU 22004, JCM 11895, NBRC 14551, strain 6432-C
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