STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ43456.1Hypothetical protein. (303 aa)    
Predicted Functional Partners:
SDZ43463.1
Protein N-acetyltransferase, RimJ/RimL family.
       0.773
SDZ43474.1
Hypothetical protein.
 
     0.732
SDZ64078.1
Hypothetical protein.
  
     0.588
SDY56805.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.575
SDZ54878.1
Alpha/beta hydrolase family protein.
  
     0.528
SDY67070.1
Pectate lyase superfamily protein.
  
     0.498
SDZ43862.1
Hypothetical protein.
  
     0.479
SDZ43481.1
Drug resistance transporter, EmrB/QacA subfamily; Non-canonical start codon; manually curated.
       0.456
SDZ49293.1
Beta-1,3-glucanase.
  
     0.445
SDZ52354.1
Hypothetical protein.
  
     0.432
Your Current Organism:
Asanoa ishikariensis
NCBI taxonomy Id: 137265
Other names: A. ishikariensis, Asanoa ishikariensis Lee and Hah 2002, Catellatispora ishikariense, Catellatospora ishikariense, DSM 44718, IFO 14551, IMSNU 22004, JCM 11895, NBRC 14551, strain 6432-C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.