STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ44776.1DNA helicase HerA, contains HAS-barrel and ATPase domains. (1061 aa)    
Predicted Functional Partners:
SDZ44765.1
Hypothetical protein.
 
     0.950
SDZ44755.1
Very-short-patch-repair endonuclease.
 
     0.945
SDZ28917.1
Hypothetical protein.
   
   0.868
SDY89785.1
Hypothetical protein.
 
     0.792
SDZ44785.1
Hypothetical protein.
       0.655
SDY68676.1
Hypothetical protein.
  
     0.528
SDZ55175.1
WD-40 repeat-containing protein.
  
     0.460
SDY60511.1
Tetratricopeptide repeat-containing protein.
  
     0.459
SDY71984.1
LasA protease.
  
     0.429
SDY91746.1
Predicted lactoylglutathione lyase.
  
     0.409
Your Current Organism:
Asanoa ishikariensis
NCBI taxonomy Id: 137265
Other names: A. ishikariensis, Asanoa ishikariensis Lee and Hah 2002, Catellatispora ishikariense, Catellatospora ishikariense, DSM 44718, IFO 14551, IMSNU 22004, JCM 11895, NBRC 14551, strain 6432-C
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