STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ50393.1Transmembrane secretion effector. (421 aa)    
Predicted Functional Partners:
SDZ63988.1
Predicted arabinose efflux permease, MFS family.
  
     0.758
SDY61930.1
Predicted arabinose efflux permease, MFS family.
  
     0.755
SDZ51812.1
Predicted arabinose efflux permease, MFS family.
  
     0.753
SDY64191.1
Predicted arabinose efflux permease, MFS family.
  
     0.717
SDZ45943.1
Fucose permease.
  
     0.704
SDY76948.1
Predicted arabinose efflux permease, MFS family.
  
     0.547
SDZ50388.1
Transcriptional regulator, TetR family.
       0.428
Your Current Organism:
Asanoa ishikariensis
NCBI taxonomy Id: 137265
Other names: A. ishikariensis, Asanoa ishikariensis Lee and Hah 2002, Catellatispora ishikariense, Catellatospora ishikariense, DSM 44718, IFO 14551, IMSNU 22004, JCM 11895, NBRC 14551, strain 6432-C
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.