STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ55571.1Transglutaminase-like superfamily protein. (235 aa)    
Predicted Functional Partners:
SDZ55577.1
Fructokinase.
       0.642
SDZ55561.1
Hypothetical protein.
       0.634
SDZ52189.1
Chlorophyll synthase.
  
     0.479
SDZ55547.1
Uncharacterized protein.
       0.479
SDZ55553.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.479
SDZ23817.1
Hypothetical protein.
  
     0.456
SDY94576.1
Regulatory protein, luxR family; Manually curated.
  
     0.449
SDZ34487.1
Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist.
  
     0.433
SDZ55585.1
Chitin-binding protein.
  
    0.429
SDZ23806.1
FtsX-like permease family protein.
  
     0.420
Your Current Organism:
Asanoa ishikariensis
NCBI taxonomy Id: 137265
Other names: A. ishikariensis, Asanoa ishikariensis Lee and Hah 2002, Catellatispora ishikariense, Catellatospora ishikariense, DSM 44718, IFO 14551, IMSNU 22004, JCM 11895, NBRC 14551, strain 6432-C
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