STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ60255.14-hydroxy-4-methyl-2-oxoglutarate aldolase. (231 aa)    
Predicted Functional Partners:
SDZ60276.1
4-oxalomesaconate hydratase.
 
  
 0.979
SDZ60271.1
3-hydroxyisobutyrate dehydrogenase.
  
  0.971
SDZ60261.1
4-oxalomesaconate tautomerase.
 
   
 0.960
SDZ60266.1
Catechol 2,3-dioxygenase.
 
     0.937
SDZ23383.1
GlcNAc-PI de-N-acetylase.
    
  0.688
SDY66679.1
N-acetylglucosaminyl deacetylase, LmbE family.
 
  
  0.661
SDZ54847.1
2-Methylisocitrate lyase, PEP mutase family.
    
  0.646
SDY90865.1
D-arabinose 1-dehydrogenase, Zn-dependent alcohol dehydrogenase family.
    
  0.598
SDZ59150.1
Hypothetical protein.
 
  
 0.594
SDY66643.1
Hypothetical protein.
 
  
 0.572
Your Current Organism:
Asanoa ishikariensis
NCBI taxonomy Id: 137265
Other names: A. ishikariensis, Asanoa ishikariensis Lee and Hah 2002, Catellatispora ishikariense, Catellatospora ishikariense, DSM 44718, IFO 14551, IMSNU 22004, JCM 11895, NBRC 14551, strain 6432-C
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