STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ67390.1Putative ABC transport system ATP-binding protein. (234 aa)    
Predicted Functional Partners:
SDZ62492.1
Putative ABC transport system permease protein.
  0.967
SDZ67396.1
Putative ABC transport system permease protein.
 
  0.937
SDZ67393.1
Hypothetical protein.
  
  0.914
SDZ67388.1
Transcriptional regulator, PadR family; Manually curated.
 
     0.806
SDZ58846.1
Putative ABC transport system permease protein.
 
  0.792
SDZ67398.1
Hypothetical protein.
       0.773
SDZ33885.1
Putative ABC transport system permease protein.
  0.772
SDZ18342.1
Putative ABC transport system permease protein.
  0.741
SDY83850.1
Putative ABC transport system permease protein.
 
  0.738
SDZ50908.1
Putative ABC transport system permease protein.
  
  0.682
Your Current Organism:
Asanoa ishikariensis
NCBI taxonomy Id: 137265
Other names: A. ishikariensis, Asanoa ishikariensis Lee and Hah 2002, Catellatispora ishikariense, Catellatospora ishikariense, DSM 44718, IFO 14551, IMSNU 22004, JCM 11895, NBRC 14551, strain 6432-C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.