Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102443376H15 domain-containing protein. (173 aa)    
Predicted Functional Partners:
CDK1
Cyclin dependent kinase 1; Belongs to the protein kinase superfamily.
   
 0.720
CCNE1
Cyclin E1; Belongs to the cyclin family.
    
 
 0.648
CDK2
Cyclin dependent kinase 2.
   
 0.619
CDK3
Cyclin dependent kinase 3; Belongs to the protein kinase superfamily.
   
 0.619
CCNA2
Cyclin A2; Belongs to the cyclin family.
   
 
 0.614
CCNA1
Cyclin A1; Belongs to the cyclin family.
   
 
 0.585
HMGB1
High mobility group box 1.
    
 0.579
HMGB2
High mobility group box 2.
    
 0.579
SUPT16H
SPT16 homolog, facilitates chromatin remodeling subunit.
    
 
 0.537
HMGB3
High mobility group box 3.
    
 0.537
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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