Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NEURL3NHR domain-containing protein. (90 aa)    
Predicted Functional Partners:
PIWIL2
Uncharacterized protein; Belongs to the argonaute family.
      
 0.696
GATA6
GATA binding protein 6.
      
 0.638
RCHY1
Ring finger and CHY zinc finger domain containing 1.
      
 0.610
CDC40
Cell division cycle 40.
      
 0.510
GATA4
GATA binding protein 4.
      
 0.491
K7FGV8_PELSI
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
      
 0.478
RNF34
Ring finger protein 34.
     
 0.470
CDC5L
Cell division cycle 5 like.
      
 0.460
LIMK1
LIM domain kinase 1.
      
 0.424
PPP4R4
Protein phosphatase 4 regulatory subunit 4.
      
 0.420
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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