STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX28DEAD-box helicase 28. (300 aa)    
Predicted Functional Partners:
UTP3
UTP3 small subunit processome component.
   
 0.955
MRM3
SpoU_methylase domain-containing protein.
  
 
 0.922
DDX52
DExD-box helicase 52.
  
0.833
KRR1
KRR1 small subunit processome component homolog.
   
 0.829
GTPBP10
GTP binding protein 10.
  
 0.813
MALSU1
Mitochondrial assembly of ribosomal large subunit 1.
   
 
 0.812
PDCD11
Programmed cell death 11.
   
 0.805
DDX49
DEAD-box helicase 49; Belongs to the DEAD box helicase family.
  
 
0.804
MRPL27
Mitochondrial ribosomal protein L27.
   
   0.803
FTSJ3
FtsJ RNA 2'-O-methyltransferase 3.
   
 0.802
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.