Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DDX28DEAD-box helicase 28. (300 aa)    
Predicted Functional Partners:
FASTKD2
FAST kinase domains 2.
   
 
 0.957
MRM3
SpoU_methylase domain-containing protein.
  
 
 0.954
TRUB2
TruB pseudouridine synthase family member 2.
  
 
 0.928
UTP3
UTP3 small subunit processome component.
   
  0.914
MALSU1
Mitochondrial assembly of ribosomal large subunit 1.
   
 
 0.882
RPUSD4
RNA pseudouridine synthase D4.
  
 
 0.862
MRPL13
Mitochondrial ribosomal protein L13.
  
 0.852
MRPL20
Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.
   
 
 0.851
GTPBP10
GTP binding protein 10.
  
 
 0.842
DDX52
DExD-box helicase 52.
  
0.828
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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