Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SOX12Transcription factor SOX. (329 aa)    
Predicted Functional Partners:
TCF7
Transcription factor 7.
    
 0.659
CTNNB1
Uncharacterized protein.
    
 0.617
GYS2
Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.
    
   0.610
SOX5
SRY-box transcription factor 5.
   
 0.598
LEF1
Lymphoid enhancer binding protein 1 (LEF-1) homologue.
    
 0.568
PRDM1
PR/SET domain 1.
    
 0.557
TCF7L1
Transcription factor 7 like 1.
    
 0.554
TCF7L2
Transcription factor 7 like 2.
    
 0.554
NISCH
Nischarin.
      
 0.551
JUP
Junction plakoglobin.
    
 0.532
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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